Lozano-Rabella et al. identified non-canonical tumor HLA-I ligands (nonC-TL) derived from alternative open reading frames of coding and non-coding regions in patient-derived cell lines of tumors of multiple histologies. Autologous pre-existing tumor-reactive T cells expanded ex vivo responded to canonical mutated, cancer-germline, or differentiation antigens, but not to 507 nonC-TL. However, HLA-matched donor PBLs sensitized in vitro against 170 nonC-TL identified TCRs reactive to three nonC-TL and cancer cell lines expressing the corresponding antigens. The three nonC-TL were expressed by multiple tumor types, but were nearly undetectable in normal cells.

Contributed by Paula Hochman

PURPOSE: Tumor antigens are central to antitumor immunity. Recent evidence suggests that peptides from non-canonical (nonC) aberrantly translated proteins can be presented on HLA-I by tumor cells. Here, we investigated the immunogenicity of nonC tumor HLA-I ligands (nonC-TL) to better understand their contribution to cancer immunosurveillance and their therapeutic applicability. EXPERIMENTAL DESIGN: Peptides presented on HLA-I were identified from 9 patient-derived TCL with melanoma, gynecological, and head and neck cancer through proteogenomics. 507 candidate tumor antigens including nonC-TL, neoantigens, cancer-germline, or melanocyte differentiation antigens were tested for T-cell recognition of pre-existing responses in cancer patients. Donor peripheral blood lymphocytes (PBL) were in vitro sensitized against 170 selected nonC-TL to isolate antigen-specific T-cell receptors (TCRs) and evaluate their therapeutic potential. RESULTS: We found no recognition of the 507 nonC-TL tested by autologous ex vivo expanded tumor-reactive T-cell cultures while the same cultures demonstrated reactivity to mutated, cancer-germline, or melanocyte differentiation antigens. However, in vitro sensitization of donor PBL against 170 selected nonC-TL, led to the identification of TCRs specific to three nonC-TL, two of which mapped to the 5' UTR regions of HOXC13 and ZKSCAN1, and one mapping to a non-coding spliced variant of C5orf22C. T cells targeting these nonC-TL recognized cancer cell lines naturally presenting their corresponding antigens. Expression of the three immunogenic nonC-TL was shared across tumor types and barely or not detected in normal cells. CONCLUSIONS: Our findings predict a limited contribution of nonC-TL to cancer immunosurveillance but demonstrate they may be attractive novel targets for widely applicable immunotherapies.

Author Info: (1) Vall d'Hebron Institute of Oncology (VHIO), Vall d'Hebron Barcelona Hospital Campus, BARCELONA, Spain. (2) Vall d'Hebron Institute of Oncology (VHIO), Vall d'Hebron Barcelona H

Author Info: (1) Vall d'Hebron Institute of Oncology (VHIO), Vall d'Hebron Barcelona Hospital Campus, BARCELONA, Spain. (2) Vall d'Hebron Institute of Oncology (VHIO), Vall d'Hebron Barcelona Hospital Campus, Barcelona, Barcelona, Spain. (3) Vall d'Hebron Institute of Oncology (VHIO), Vall d'Hebron Barcelona Hospital Campus, Barcelona, Spain. (4) Vall d'Hebron Institute of Oncology (VHIO), Vall d'Hebron Barcelona Hospital Campus, BARCELONA, Spain. (5) Institute for Virology and Immunobiology, University of WŸrzburg, WŸrzburg, Germany. (6) Catalan Institute of Oncology (ICO) Hospitalet, Barcelona, Spain. (7) Vall d'Hebron Hospital Universitari, Barcelona, Spain. (8) Vall d'Hebron University Hospital.Vall d'Hebron Institute of Oncology (VHIO)., Barcelona, Spain. (9) NCI/NIH, Bethesda, MD, United States. (10) Eberhard Karls University TŸbingen, TŸbingen, Germany. (11) Vall d'Hebron Insitute of Oncology, Barcelona, Spain. (12) Bellvitge University Hospital. Bellvitge Biomedical Research Institute (IDIBELL). CIBERONC., L'Hospitalet de Llobregat, Barcelona, Spain. (13) Institut Catalˆ d'Oncologia-IDIBELL, L'Hospitalet del Llobregat, Barcelona, Spain. (14) University Hospital of Bellvitge. IDIBELL. Barcelona, Hospitalet de Llobregat, Barcelona, Barcelona, Spain. (15) Vall d'Hebron Institute of Oncology, Barcelona, Barcelona, Spain. (16) Vall d'Hebron Institute of Oncology, barcelona, barcelona, spain, Spain. (17) Vall de Hebron Institute of Oncology ( VHIO), Barcelona, Spain. (18) University of WŸrzburg, Wuerzburg, Germany. (19) Vall d'Hebron Institute of Oncology (VHIO), Vall d'Hebron Barcelona Hospital Campus, Barcelona, Spain.